PUBLICATIONS
2022
Sandin, S. A., [...], Silveira, C.B., et al. Benthic assemblages are more predictable than fish assemblages at an island scale. Coral Reefs (2022) doi: https://link.springer.com/article/10.1007/s00338-022-02272-5
Han, L., Yu, D., Li, B., Du, S., Silveira, C.B., Cobian-Guemes, A.G., Zhang, L., He, J., Rohwer, F. Distribution of soil viruses across China and their potential role in phosphorous metabolism. Environmental Microbiome 17(6), 1-11. 2022.
2021
Silveira, C.B, Cobián-Guemes, A.G., Uranga, C., Baker, J., Edlund. A., Rohwer. F., Conrad. D. Keystone bacterial species in a cystic fibrosis fermentative community. International Journal of Molecular Sciences 22(21), 12050. 2021.
Voolstra, C.R., Suggett, D.J., Peixoto, R.S., Parkinson, J.E., Quigley, K.M., Silveira, C.B., Sweet, M., Muller, E.M., Barshis, D.J., Bourne, D.G., Aranda, M. Extending the natural adaptive capacity of coral holobionts. 2021. Nature Reviews Earth & Environment doi: https://doi.org/10.1038/s43017-021-00214-3
Silveira, C. B., Luque, A., Rohwer, F. The landscape of lysogeny across microbial community density, diversity and energetics. 2021. Environmental Microbiology 23(8), 4098–4111.
Forcone, K.H., Coutinho, F.H., Cavalcanci, G.S., Silveira, C.B. Prophage genomics and ecology in the family Rhodobacteraceae. 2021. Microorganisms 9(6):1115. 2021.
Ventero, M.P., Cuadrat, R., Vidal, I., Andrade, B., Molina-Pardines, C., Haro-Moreno, J.M., Coutinho, F., Merino, E., Regitano, L.C.A., Silveira, C.B., Afli, H., Lopez-Perez, M., Rodriguez, J.C. Nasopharingeal microbial communities of patients infected with SARS-COV-2 that developed COVID-19. 2021. Frontiers in Microbiology 12:637430.
Little, M., George, E.E., Arts, M.G.I., Shivak, J., Huckeba, J., Benler, S., Quinlan, Z.A.D., Boscaro, V., Mueller, B., Cobián-Güemes, A.G., Rojas, M.I., White, B., Petras, D., Silveira, C.B., Haas, A.F., Kelly, L.W., Vermeij, M., Quinn, R.A., Keeling, P.J., Dorrestein, P.C., Rohwer, F., Roach. T.N.F. Three-dimensional molecular cartography of the Caribbean reef-building coral Orbicella faveolata. 2021. Frontiers in Marine Science 8:627724.
George, E., Mullinix, J., Meng, F., Bailey, B., Edwards, C., Felts, B., Haas, A., Hartmann, A., Mueller, B., Nulton, J., Roach, T., Salamon, P., Silveira, C.B., Vermeij, M., Rohwer, F., Luque, A. Space-filling and benthic competition on coral reefs. 2021. PeerJ 9:e11213.
2020
Silveira, C.B., Coutinho, F.H., Cavalcanti, G.S. et al. Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes. 2020 BMC Genomics 21, 126.
Luque, A., Silveira, C. Quantification of lysogeny caused by phage coinfections in microbial communities from biophysical principles. 2020. bioRxiv.
Roach, T.N.F., Little, M., Arts, M.G.I, Huckeba, J., Haas, A.F., George, E.E., Quinn, R., Naliboff, D.S., Silveira, C.B., Vermeij, M.J.A., Wegley Kelly, L., Rohwer, F. A multi-omic analysis of in situ coral-turf algal interactions. 2020. PNAS.
Silveira, C.B., Cobian-Guemes, A.G., Uranga, C., Baker, J., Edlund, A., Rohwer,D., Conrad, D. Multi-omics study of keystone species in the cystic fibrosis lung microbiome. 2020, Under review at Microbiome, available on Research Square. doi:10.21203/rs.3.rs-18792/v1.
Anthenelli, M., Jasien, E., Edwards, R.V., Bailey, B., Felts, B., Katira, P., Nulton, J., Rohwer, F., Silveira, C.B. and Luque, A., 2020. Phage and bacteria diversification through a prophage acquisition ratchet. bioRxiv. doi: https://doi.org/10.1101/2020.04.08.028340
Francini-Filho, R.B., Silveira, C.B. Importância de Áreas Marinhas Protegidas para conservação da biodiversidade e do patrimônio biotecnológico brasileiro. In Fundamentos de Biotecnologia Marinha. Thompson, F. PPGMAR (CIRM), in press.
2019
Silveira, C.B., Luque, A., Roach, T.N.F., Villela, H., Barno, A., Reyes, B., Rubio-Portillo, E., Le, T., Hatay, M., Vermeij, M., Takeshita, Y., Bailey, B., Haas, A., Rohwer, F. Biophysical and physiological processes causing oxygen loss from coral reefs. eLife 8:e49114. 2019.
*Articled featured in an eLife Digest: https://elifesciences.org/digests/49114/starving-corals-of-oxygen.
2018
Silveira, C.B., Roach, T.N.F., Villela, H., Barno, A., Reyes, B., Rubio-Portillo, E., Le, T., Mead, S., Wegley-Kelly, L., Luque, T., Hatay, M., Vermeij, M., Takeshita, Y., Bailey, B., Haas, A., Rohwer, F. Biophysical and physiological causes of coral reef microbialization. 2018. bioRxiv. doi: https://doi.org/10.1101/495481.
George, E., Mullinix, J., Meng, F., Bailey, B., Edwards, C., Felts, B., Haas, A., Hartmann, A., Mueller, B., Nulton, J., Roach, T., Salamon, P., Silveira, C.B., Vermeij, M., Rohwer, F., Luque, A. Relevance of coral geometry in the outcomes of the coral-algal benthic war. 2018. bioRxiv. doi: https://doi.org/10.1101/327031.
Nakajima, R., Haas, A., Silveira, C.B., Kelly, E., Smith, J., Sandin, S., Kelly, L., Rohwer, F., Nakatomi, N., Kurihara, H. Release of dissolved and particulate organic matter by the soft coral Lobophytum and subsequent microbial degradation. Journal of Experimental Marine Biology and Ecology (504) 53 – 60. 2018.
2017
Silveira, C.B., Cavalcanti, G.S., Walter, J., Silva-Lima, A.W., Dinsdale, L., Bourne, D., Thompson, C.C., and Thompson, F. Microbial processes driving coral reef organic carbon flow. FEMS Microbiology Reviews 41(4) 575–595. 2017.
Silveira, C.B, Gregoracci, G.B, Coutinho, F.H., Silva, G.G.Z, Haggerty, J.M., Oliveira, L., Cabral, A., Rezende, C.E., Thompson, C.C., Francini-Filho, R.B., Edwards, R.A., Dinsdale, E.A., Rohwer, F., and Thompson, F.L. Bacterial community associated with the reef coral Mussismilia braziliensis’s momentum boundary layer over a diel cycle. Frontiers in Microbiology 8, 784. 2017.
Coutinho, F.H., Silveira, C.B., Gregoracci, G.B., Thompson, C.C., Edwards, R.A., Brussaard, C., Dutilh, B., and Thompson, F.L. Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans. Nature Communications 8, 15955. 2017.
Knowles, B., Bailey, B., Boling, L., Breitbart, M., Cobián-Güemes, A., del Campo, J., Edwards, R., Felts, B., Grasis, J., Haas, A.F., Katira, P., Kelly, L.W., Luque, A., Nulton, J., Paul, L., Peters, G., Robinett, N., Sandin, S., Segall, A., Silveira, C.B., Youle, M., Rohwer, F. Variability and host density independence in inductions-based estimates of environmental lysogeny. Nature Microbiology 2, 17064. 2017.
2016
*Knowles B., *Silveira C.B., Bailey, B.A., Barott, K., Cantu, V.A., Cobián-Güemes, A.G., Coutinho F.H., Dinsdale E.A., Felts, B., Furby K., George, E.E., Green, K.T., Gregoratti G., Haas A.F., Haggerty M., Hester E., Hisakawa N., Kelly L.W., Lim Y.W., Little M., Luque, A., McDole-Somera T., McNair, K., Oliveira L.S., Quistad S.D., Robinett, N.L., Sala, E., Salamon, P., Sanchez S.E., Sandin S., Silva G.G.Z., Smith J., Sullivan, C., Thompson C.C., Vermeij, M.J.A., Youle, M., Young C., Zyglinski B., Brainard R., Edwards R.A., Nulton J., Thompson F., and Rohwer F. Lytic to Temperate Switching of Viral Communities. Nature 531 (7595), 466-470. 2016.
*These authors contributed equally to this work
Silveira, C.B. and Rohwer, F. Piggyback-the-Winner in host-associated microbial communities. Nature Biofilms and Microbiomes 2, 16010. 2016.
Haas, A.F., Fairoz, M.F.M., Kelly, L.W., Nelson, C., Lim, Y.W., Knowles, B., Dinsdale, E.A., Edwards, R. A., Giles, S., Hatay, M., Hisakawa, N., Maughan, H., Pantos, O., Roach, T., Sanchez, S.E., Silveira, C.B., Sandin, S., Smith, J., Rohwer, F. Global microbialization of coral reefs. Nature Microbiology 1, 16042. 2016.
Somera, T.M., Bailey, B., Barott, K., Grasis, J., Hatay, M., Hilton, B.J., Hisakawa, N., Nosrat, B., Nulton, J., Silveira, C.B., Sullivan, C., Brainard, R., Rohwer, F. Energetic differences between bacterioplankton trophic groups and coral reef resistance. Proceedings of the Royal Society B. 283 (1829), 20160467. 2016.
2015
Silveira, C.B., Silva-Lima, A.W., Francini-Filho, R.B., Marques, J.S.M., Almeida, M.G., Rezende, C.E., Paranhos, R., Moura, R.L., Salomon, P.S., and Thompson, F.L. Microbial and sponge loops modify fish production in phase-shifting coral reefs. Environmental Microbiology 17 (10), 3832-3846. 2015.
2014
Silveira, C.B., Thompson, F.L. The Family Alcanivoraceae. In The Prokaryotes, 7th Edition. Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. Springer, 2014, v.6, p.59 – 68.
2013
Coutinho, F.H., Silveira, C.B., Pinto, L.H., Salloto, G.R.B., Cardoso, A.M., Martins, O.B., Vieira, R.P., Clementino, M.M. Antibiotic resistance is widespread in urban aquatic environments of Rio de Janeiro, Brazil. Microbial Ecology 68(3), 441-452. 2014.
Silveira, C.B., Cardoso, A.M., Coutinho, F.H., Lima, J.L., Pinto, L.H., Albano, R.M., Clementino, M.B. M., Martins, O.B., Vieira, R.P. Tropical aquatic archaea show environment-specific community composition. PLoS One 8, 76321. 2013.
Bertino-Grimaldi, D., Medeiros, M.N., Vieira, R.P., Cardoso, A.M., Turque, A.S., Silveira, C.B., Albano, R.M., Bressan-Nascimento, S., Garcia, E.S., De Souza, W., Martins, O.B., Machado, E.A. Bacterial community composition shifts in the gut of Periplaneta americana fed on different lignocellulosic materials. SpringerPlus 2(609). 2013.
Lins-de-Barros, M.M., Cardoso, A., Silveira, C.B., Cardoso, A.M., Lima, J.L., Clementino, M.M., Martins, O.B., Albano, R.M., Vieira, R.P. Microbial Community compositional shifts in bleached colonies of the Brazilian reef-building coral Siderastrea stellata. Microbial Ecology 65, 205-213. 2013.
Cavalcanti, G.S., Gregoracci, G.B., Dos Santos, E.O., Silveira, C.B., Meirelles, P.M., Longo, L., Gotoh, K., Nakamura, S., Iida, T., Sawabe, T., Rezende, C.E., Francini-Filho, R.B., Moura, R.L., Amado-Filho, G. M., Thompson, F.L. Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO3 bed in the South Atlantic Ocean. The ISME Journal 8(1), 52-62. 2013.
2012
Cardoso, A.M., Coutinho, F.H., Silveira, C.B., Ignacio, B.L., Vieira, R.P., Salloto, G.R., Clementino, M.B. M., Albano, R.M., Paranhos, R., Martins, O.B. Metagenomics in Polluted Aquatic Environments. In Water Pollution. In Tech, 2012, p.89-104.
2011
Silveira, C.B., Vieira, R.P., Cardoso, A.M., Paranhos, R., Albano, R.M., Martins, O.B. Influence of salinity on bacterioplankton communities from the Brazilian rain forest to the coastal Atlantic Ocean. PLoS One 6, 17789. 2011.
2010
Lins-de-Barros, M.M., Vieira, R.P., Cardoso, A. M., Monteiro, V.A., Turque, A.S., Silveira, C.B., Albano, R.M., Clementino, M.M., Martins, O.B. Archaea, Bacteria, and Algal Plastids Associated with the Reef-Building Corals Siderastrea stellata and Mussismilia hispida from Búzios, South Atlantic Ocean, Brazil. Microbial Ecology 59, 523-532. 2010.
Turque, A.S., Batista, D., Silveira, C.B., Cardoso, A.M., Vieira, R.P., Moraes, F.C., Clementino, M.M., Albano, R.M., Paranhos, R., Martins, O.B., Muricy, G. Environmental shaping of sponge- associated archaeal communities. PLoS One 5, 15774. 2010.
2009
Almeida, W.I., Vieira, R.P., Cardoso, A.M., Silveira, C.B., Costa, R.G., Gonzalez, A.M., Paranhos, R., Medeiros, J.A., Freitas, F.A., Albano, R.M., Martins, O.B. Archaeal and bacterial communities of heavy metal contaminated acidic waters from zinc mine residues in Sepetiba Bay. Extremophiles 13, 263-271. 2009.
2008
Turque, A.S., Cardoso, A.M., Silveira, C.B., Vieira, R.P., Freitas, F.A.D., Albano, R.M., Gonzalez, A.M., Paranhos, R., Muricy, G., Martins, O.B. Bacterial communities of the marine sponges Hymeniacidon heliophila and Polymastia janeirensis and their environment in Rio de Janeiro, Brazil. Marine Biology 155, 135-146. 2008.
Turque, A.S., Silveira, C.B., Vieira, R.P., Muricy, G., Cardoso, A.M., Clementino, M.B.M., Martins, O. B. Microrganismos Associados a Poríferos. Biotecnologia Ciência & Desenvolvimento 37, 64-69. 2008.
Clementino, M.B.M., Vieira R.P., Cardoso, A.M., Nascimento, A.P.A., Silveira, C.B., Riva, T.C., Gonzalez, A.S.M., Paranhos, R., Albano, R.M., Ventosa, A., Martins, O.B. Prokaryotic diversity in one of the largest hypersaline coastal lagoons in the world. Extremophiles 12(4), 595-604. 2008.
2022
Sandin, S. A., [...], Silveira, C.B., et al. Benthic assemblages are more predictable than fish assemblages at an island scale. Coral Reefs (2022) doi: https://link.springer.com/article/10.1007/s00338-022-02272-5
Han, L., Yu, D., Li, B., Du, S., Silveira, C.B., Cobian-Guemes, A.G., Zhang, L., He, J., Rohwer, F. Distribution of soil viruses across China and their potential role in phosphorous metabolism. Environmental Microbiome 17(6), 1-11. 2022.
2021
Silveira, C.B, Cobián-Guemes, A.G., Uranga, C., Baker, J., Edlund. A., Rohwer. F., Conrad. D. Keystone bacterial species in a cystic fibrosis fermentative community. International Journal of Molecular Sciences 22(21), 12050. 2021.
Voolstra, C.R., Suggett, D.J., Peixoto, R.S., Parkinson, J.E., Quigley, K.M., Silveira, C.B., Sweet, M., Muller, E.M., Barshis, D.J., Bourne, D.G., Aranda, M. Extending the natural adaptive capacity of coral holobionts. 2021. Nature Reviews Earth & Environment doi: https://doi.org/10.1038/s43017-021-00214-3
Silveira, C. B., Luque, A., Rohwer, F. The landscape of lysogeny across microbial community density, diversity and energetics. 2021. Environmental Microbiology 23(8), 4098–4111.
Forcone, K.H., Coutinho, F.H., Cavalcanci, G.S., Silveira, C.B. Prophage genomics and ecology in the family Rhodobacteraceae. 2021. Microorganisms 9(6):1115. 2021.
Ventero, M.P., Cuadrat, R., Vidal, I., Andrade, B., Molina-Pardines, C., Haro-Moreno, J.M., Coutinho, F., Merino, E., Regitano, L.C.A., Silveira, C.B., Afli, H., Lopez-Perez, M., Rodriguez, J.C. Nasopharingeal microbial communities of patients infected with SARS-COV-2 that developed COVID-19. 2021. Frontiers in Microbiology 12:637430.
Little, M., George, E.E., Arts, M.G.I., Shivak, J., Huckeba, J., Benler, S., Quinlan, Z.A.D., Boscaro, V., Mueller, B., Cobián-Güemes, A.G., Rojas, M.I., White, B., Petras, D., Silveira, C.B., Haas, A.F., Kelly, L.W., Vermeij, M., Quinn, R.A., Keeling, P.J., Dorrestein, P.C., Rohwer, F., Roach. T.N.F. Three-dimensional molecular cartography of the Caribbean reef-building coral Orbicella faveolata. 2021. Frontiers in Marine Science 8:627724.
George, E., Mullinix, J., Meng, F., Bailey, B., Edwards, C., Felts, B., Haas, A., Hartmann, A., Mueller, B., Nulton, J., Roach, T., Salamon, P., Silveira, C.B., Vermeij, M., Rohwer, F., Luque, A. Space-filling and benthic competition on coral reefs. 2021. PeerJ 9:e11213.
2020
Silveira, C.B., Coutinho, F.H., Cavalcanti, G.S. et al. Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes. 2020 BMC Genomics 21, 126.
Luque, A., Silveira, C. Quantification of lysogeny caused by phage coinfections in microbial communities from biophysical principles. 2020. bioRxiv.
Roach, T.N.F., Little, M., Arts, M.G.I, Huckeba, J., Haas, A.F., George, E.E., Quinn, R., Naliboff, D.S., Silveira, C.B., Vermeij, M.J.A., Wegley Kelly, L., Rohwer, F. A multi-omic analysis of in situ coral-turf algal interactions. 2020. PNAS.
Silveira, C.B., Cobian-Guemes, A.G., Uranga, C., Baker, J., Edlund, A., Rohwer,D., Conrad, D. Multi-omics study of keystone species in the cystic fibrosis lung microbiome. 2020, Under review at Microbiome, available on Research Square. doi:10.21203/rs.3.rs-18792/v1.
Anthenelli, M., Jasien, E., Edwards, R.V., Bailey, B., Felts, B., Katira, P., Nulton, J., Rohwer, F., Silveira, C.B. and Luque, A., 2020. Phage and bacteria diversification through a prophage acquisition ratchet. bioRxiv. doi: https://doi.org/10.1101/2020.04.08.028340
Francini-Filho, R.B., Silveira, C.B. Importância de Áreas Marinhas Protegidas para conservação da biodiversidade e do patrimônio biotecnológico brasileiro. In Fundamentos de Biotecnologia Marinha. Thompson, F. PPGMAR (CIRM), in press.
2019
Silveira, C.B., Luque, A., Roach, T.N.F., Villela, H., Barno, A., Reyes, B., Rubio-Portillo, E., Le, T., Hatay, M., Vermeij, M., Takeshita, Y., Bailey, B., Haas, A., Rohwer, F. Biophysical and physiological processes causing oxygen loss from coral reefs. eLife 8:e49114. 2019.
*Articled featured in an eLife Digest: https://elifesciences.org/digests/49114/starving-corals-of-oxygen.
2018
Silveira, C.B., Roach, T.N.F., Villela, H., Barno, A., Reyes, B., Rubio-Portillo, E., Le, T., Mead, S., Wegley-Kelly, L., Luque, T., Hatay, M., Vermeij, M., Takeshita, Y., Bailey, B., Haas, A., Rohwer, F. Biophysical and physiological causes of coral reef microbialization. 2018. bioRxiv. doi: https://doi.org/10.1101/495481.
George, E., Mullinix, J., Meng, F., Bailey, B., Edwards, C., Felts, B., Haas, A., Hartmann, A., Mueller, B., Nulton, J., Roach, T., Salamon, P., Silveira, C.B., Vermeij, M., Rohwer, F., Luque, A. Relevance of coral geometry in the outcomes of the coral-algal benthic war. 2018. bioRxiv. doi: https://doi.org/10.1101/327031.
Nakajima, R., Haas, A., Silveira, C.B., Kelly, E., Smith, J., Sandin, S., Kelly, L., Rohwer, F., Nakatomi, N., Kurihara, H. Release of dissolved and particulate organic matter by the soft coral Lobophytum and subsequent microbial degradation. Journal of Experimental Marine Biology and Ecology (504) 53 – 60. 2018.
2017
Silveira, C.B., Cavalcanti, G.S., Walter, J., Silva-Lima, A.W., Dinsdale, L., Bourne, D., Thompson, C.C., and Thompson, F. Microbial processes driving coral reef organic carbon flow. FEMS Microbiology Reviews 41(4) 575–595. 2017.
Silveira, C.B, Gregoracci, G.B, Coutinho, F.H., Silva, G.G.Z, Haggerty, J.M., Oliveira, L., Cabral, A., Rezende, C.E., Thompson, C.C., Francini-Filho, R.B., Edwards, R.A., Dinsdale, E.A., Rohwer, F., and Thompson, F.L. Bacterial community associated with the reef coral Mussismilia braziliensis’s momentum boundary layer over a diel cycle. Frontiers in Microbiology 8, 784. 2017.
Coutinho, F.H., Silveira, C.B., Gregoracci, G.B., Thompson, C.C., Edwards, R.A., Brussaard, C., Dutilh, B., and Thompson, F.L. Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans. Nature Communications 8, 15955. 2017.
Knowles, B., Bailey, B., Boling, L., Breitbart, M., Cobián-Güemes, A., del Campo, J., Edwards, R., Felts, B., Grasis, J., Haas, A.F., Katira, P., Kelly, L.W., Luque, A., Nulton, J., Paul, L., Peters, G., Robinett, N., Sandin, S., Segall, A., Silveira, C.B., Youle, M., Rohwer, F. Variability and host density independence in inductions-based estimates of environmental lysogeny. Nature Microbiology 2, 17064. 2017.
2016
*Knowles B., *Silveira C.B., Bailey, B.A., Barott, K., Cantu, V.A., Cobián-Güemes, A.G., Coutinho F.H., Dinsdale E.A., Felts, B., Furby K., George, E.E., Green, K.T., Gregoratti G., Haas A.F., Haggerty M., Hester E., Hisakawa N., Kelly L.W., Lim Y.W., Little M., Luque, A., McDole-Somera T., McNair, K., Oliveira L.S., Quistad S.D., Robinett, N.L., Sala, E., Salamon, P., Sanchez S.E., Sandin S., Silva G.G.Z., Smith J., Sullivan, C., Thompson C.C., Vermeij, M.J.A., Youle, M., Young C., Zyglinski B., Brainard R., Edwards R.A., Nulton J., Thompson F., and Rohwer F. Lytic to Temperate Switching of Viral Communities. Nature 531 (7595), 466-470. 2016.
*These authors contributed equally to this work
Silveira, C.B. and Rohwer, F. Piggyback-the-Winner in host-associated microbial communities. Nature Biofilms and Microbiomes 2, 16010. 2016.
Haas, A.F., Fairoz, M.F.M., Kelly, L.W., Nelson, C., Lim, Y.W., Knowles, B., Dinsdale, E.A., Edwards, R. A., Giles, S., Hatay, M., Hisakawa, N., Maughan, H., Pantos, O., Roach, T., Sanchez, S.E., Silveira, C.B., Sandin, S., Smith, J., Rohwer, F. Global microbialization of coral reefs. Nature Microbiology 1, 16042. 2016.
Somera, T.M., Bailey, B., Barott, K., Grasis, J., Hatay, M., Hilton, B.J., Hisakawa, N., Nosrat, B., Nulton, J., Silveira, C.B., Sullivan, C., Brainard, R., Rohwer, F. Energetic differences between bacterioplankton trophic groups and coral reef resistance. Proceedings of the Royal Society B. 283 (1829), 20160467. 2016.
2015
Silveira, C.B., Silva-Lima, A.W., Francini-Filho, R.B., Marques, J.S.M., Almeida, M.G., Rezende, C.E., Paranhos, R., Moura, R.L., Salomon, P.S., and Thompson, F.L. Microbial and sponge loops modify fish production in phase-shifting coral reefs. Environmental Microbiology 17 (10), 3832-3846. 2015.
2014
Silveira, C.B., Thompson, F.L. The Family Alcanivoraceae. In The Prokaryotes, 7th Edition. Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. Springer, 2014, v.6, p.59 – 68.
2013
Coutinho, F.H., Silveira, C.B., Pinto, L.H., Salloto, G.R.B., Cardoso, A.M., Martins, O.B., Vieira, R.P., Clementino, M.M. Antibiotic resistance is widespread in urban aquatic environments of Rio de Janeiro, Brazil. Microbial Ecology 68(3), 441-452. 2014.
Silveira, C.B., Cardoso, A.M., Coutinho, F.H., Lima, J.L., Pinto, L.H., Albano, R.M., Clementino, M.B. M., Martins, O.B., Vieira, R.P. Tropical aquatic archaea show environment-specific community composition. PLoS One 8, 76321. 2013.
Bertino-Grimaldi, D., Medeiros, M.N., Vieira, R.P., Cardoso, A.M., Turque, A.S., Silveira, C.B., Albano, R.M., Bressan-Nascimento, S., Garcia, E.S., De Souza, W., Martins, O.B., Machado, E.A. Bacterial community composition shifts in the gut of Periplaneta americana fed on different lignocellulosic materials. SpringerPlus 2(609). 2013.
Lins-de-Barros, M.M., Cardoso, A., Silveira, C.B., Cardoso, A.M., Lima, J.L., Clementino, M.M., Martins, O.B., Albano, R.M., Vieira, R.P. Microbial Community compositional shifts in bleached colonies of the Brazilian reef-building coral Siderastrea stellata. Microbial Ecology 65, 205-213. 2013.
Cavalcanti, G.S., Gregoracci, G.B., Dos Santos, E.O., Silveira, C.B., Meirelles, P.M., Longo, L., Gotoh, K., Nakamura, S., Iida, T., Sawabe, T., Rezende, C.E., Francini-Filho, R.B., Moura, R.L., Amado-Filho, G. M., Thompson, F.L. Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO3 bed in the South Atlantic Ocean. The ISME Journal 8(1), 52-62. 2013.
2012
Cardoso, A.M., Coutinho, F.H., Silveira, C.B., Ignacio, B.L., Vieira, R.P., Salloto, G.R., Clementino, M.B. M., Albano, R.M., Paranhos, R., Martins, O.B. Metagenomics in Polluted Aquatic Environments. In Water Pollution. In Tech, 2012, p.89-104.
2011
Silveira, C.B., Vieira, R.P., Cardoso, A.M., Paranhos, R., Albano, R.M., Martins, O.B. Influence of salinity on bacterioplankton communities from the Brazilian rain forest to the coastal Atlantic Ocean. PLoS One 6, 17789. 2011.
2010
Lins-de-Barros, M.M., Vieira, R.P., Cardoso, A. M., Monteiro, V.A., Turque, A.S., Silveira, C.B., Albano, R.M., Clementino, M.M., Martins, O.B. Archaea, Bacteria, and Algal Plastids Associated with the Reef-Building Corals Siderastrea stellata and Mussismilia hispida from Búzios, South Atlantic Ocean, Brazil. Microbial Ecology 59, 523-532. 2010.
Turque, A.S., Batista, D., Silveira, C.B., Cardoso, A.M., Vieira, R.P., Moraes, F.C., Clementino, M.M., Albano, R.M., Paranhos, R., Martins, O.B., Muricy, G. Environmental shaping of sponge- associated archaeal communities. PLoS One 5, 15774. 2010.
2009
Almeida, W.I., Vieira, R.P., Cardoso, A.M., Silveira, C.B., Costa, R.G., Gonzalez, A.M., Paranhos, R., Medeiros, J.A., Freitas, F.A., Albano, R.M., Martins, O.B. Archaeal and bacterial communities of heavy metal contaminated acidic waters from zinc mine residues in Sepetiba Bay. Extremophiles 13, 263-271. 2009.
2008
Turque, A.S., Cardoso, A.M., Silveira, C.B., Vieira, R.P., Freitas, F.A.D., Albano, R.M., Gonzalez, A.M., Paranhos, R., Muricy, G., Martins, O.B. Bacterial communities of the marine sponges Hymeniacidon heliophila and Polymastia janeirensis and their environment in Rio de Janeiro, Brazil. Marine Biology 155, 135-146. 2008.
Turque, A.S., Silveira, C.B., Vieira, R.P., Muricy, G., Cardoso, A.M., Clementino, M.B.M., Martins, O. B. Microrganismos Associados a Poríferos. Biotecnologia Ciência & Desenvolvimento 37, 64-69. 2008.
Clementino, M.B.M., Vieira R.P., Cardoso, A.M., Nascimento, A.P.A., Silveira, C.B., Riva, T.C., Gonzalez, A.S.M., Paranhos, R., Albano, R.M., Ventosa, A., Martins, O.B. Prokaryotic diversity in one of the largest hypersaline coastal lagoons in the world. Extremophiles 12(4), 595-604. 2008.